http://www.mkyong.com/hibernate/how-to-call-store-procedure-in-hibernate/
In this tutorial, you will learn how to call a store procedure in Hibernate.
MySQL store procedure
Here’s a MySQL store procedure, which accept a stock code parameter and return the related stock data.

SQL

DELIMITER $$

CREATE PROCEDURE `GetStocks`(int_stockcode varchar(20))
BEGIN
   SELECT * FROM stock where stock_code = int_stockcode;
   END $$

DELIMITER ;

In MySQL, you can simple call it with a call keyword :

SQL

CALL GetStocks('7277');

Hibernate call store procedure
In Hibernate, there are three approaches to call a database store procedure.
1. Native SQL – createSQLQuery
You can use createSQLQuery() to call a store procedure directly.

Java

Query query = session.createSQLQuery(
	"CALL GetStocks(:stockCode)")
	.addEntity(Stock.class)
	.setParameter("stockCode", "7277");
			
List result = query.list();
for(int i=0; i<result.size(); i++){
	Stock stock = (Stock)result.get(i);
	System.out.println(stock.getStockCode());
}

2. NamedNativeQuery in annotation
Declare your store procedure inside the @NamedNativeQueries annotation.

Java

//Stock.java
...
@NamedNativeQueries({
	@NamedNativeQuery(
	name = "callStockStoreProcedure",
	query = "CALL GetStocks(:stockCode)",
	resultClass = Stock.class
	)
})
@Entity
@Table(name = "stock")
public class Stock implements java.io.Serializable {
...

Call it with getNamedQuery().

Java

Query query = session.getNamedQuery("callStockStoreProcedure")
	.setParameter("stockCode", "7277");
List result = query.list();
for(int i=0; i<result.size(); i++){
	Stock stock = (Stock)result.get(i);
	System.out.println(stock.getStockCode());
}

3. sql-query in XML mapping file
Declare your store procedure inside the “sql-query” tag.

Markup

<!-- Stock.hbm.xml -->
...
<hibernate-mapping>
    <class name="com.mkyong.common.Stock" table="stock" ...>
        <id name="stockId" type="java.lang.Integer">
            <column name="STOCK_ID" />
            <generator class="identity" />
        </id>
        <property name="stockCode" type="string">
            <column name="STOCK_CODE" length="10" not-null="true" unique="true" />
        </property>
        ...
    </class>
    
    <sql-query name="callStockStoreProcedure">
	<return alias="stock" class="com.mkyong.common.Stock"/>
	<![CDATA[CALL GetStocks(:stockCode)]]>
    </sql-query>
	
</hibernate-mapping>

Call it with getNamedQuery().

Java

Query query = session.getNamedQuery("callStockStoreProcedure")
	.setParameter("stockCode", "7277");
List result = query.list();
for(int i=0; i<result.size(); i++){
	Stock stock = (Stock)result.get(i);
	System.out.println(stock.getStockCode());
}

Conclusion
The above three approaches are doing the same thing, call a store procedure in database. There are not much big different between the three approaches, which method you choose is depend on your personal prefer.